Scaffold Ga0116111

Basic Information
Taxon OID	3300009616 Open in IMG/M
Scaffold ID	Ga0116111_1003251 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009616 Open in IMG/M

Scaffold ID

Ga0116111_1003251 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9074
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9074

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)	1 to 1.25
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

1 to 1.25

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000451	Metagenome / Metatranscriptome	1124	Y
F002261	Metagenome / Metatranscriptome	577	Y
F003186	Metagenome / Metatranscriptome	502	N
F010139	Metagenome / Metatranscriptome	308	Y
F021908	Metagenome / Metatranscriptome	216	Y
F093113	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116111_100325110	F002261	GGA	MPNWPSIEAFVDGVISQTFGEPVVYQPVQAGAAQGSAFTVTAVRHLRVREESGAMANFEEISVNSSDFSNPPAKGDWVTAWGAQYVVTTVRQPDAYGMLNLALLQRAS*
Ga0116111_100325112	F093113	AGGAG	MAIKVEKTPINAPEFQSAGPQPNFKGSYPSKQKQFLSAVQTGNGAQQSIAHGLGSVPAGVLVSCADNSGSANVFTVTEGTHDSTNVKVTVTTSAKYKILAWL*
Ga0116111_10032512	F000451	GGA	MPRFQTAIRRARFVYSPYTATEMQGFAQVLADSIRARIQSGRNIYDQAAAPLKPGQSGRRGYPDYKSARGLQPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEAFPGRRLTASQIAAFNNRREAQWGVSPRDRQAVLAAFQARPFVMLKAA*
Ga0116111_10032515	F021908	N/A	LDGCPACGADWKAIDVSHGPGCPKNLLEEAMDTPSGALVRRCFRILNAKSIGLTITLADITEEEFRILELIEAERQDTRTGKC*
Ga0116111_10032518	F010139	GAGG	METVFMRSPDGEVKEVEATTETLTPRMASGWHQVPAPAAAQKPVVVAEEEK*
Ga0116111_10032519	F003186	GAG	VINPKTILGEWVTALQSCPDLVDALGGDGDNIRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGSLHFAHRFSIYLRAPEQDSTATYADLFWLLVSAKPTGAPSWESLLHLQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116111_1003251

Overview

Ecosystem & Geography

Associated Families

Sequences