Scaffold Ga0116111

Basic Information
Taxon OID	3300009616 Open in IMG/M
Scaffold ID	Ga0116111_1001738 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009616 Open in IMG/M

Scaffold ID

Ga0116111_1001738 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14526
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (63.16%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14526

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (63.16%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)	1 to 1.25
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

1 to 1.25

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007078	Metagenome / Metatranscriptome	358	Y
F011239	Metagenome / Metatranscriptome	293	Y
F012485	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116111_100173810	F011239	GAGG	MIEAETLKSIARELMTGTSVSVGGISTPVRRTSRQHLKTAAFSVEGHEYEAIEQNPEKPSRWGQLARSGHHVVQFKDAESNRFVAVVVDGEVTFYGASKKQS*
Ga0116111_100173813	F007078	GAGG	VRDSTARLQRAARQRADEEARRIPWQRLHEVRNQYIDWQEFNLWARSIFEVEERIPDWLAKILNDRCPGFLQAEKELTPKAAKNRPLPLRLEDWIDEHVFEFAKKEGWFNAITYYAIRDPRYQRAEVCWSECIEKWKKTRPLRYPSLEEWRCMAAECDETARLVASEQEPRSSSKLVDPDRLSDAVSRYIDWEALAYWAQPALERCPHLPAAAFCELEQRCPGFLELHAPQKDSRAASQAWPRLMLWITDHFFQDAKTEGWFDAILVQARSHPRAIRTMEYADHCDEQWGSRVPEPYPAFENWRREADSYVEVPGK*
Ga0116111_100173816	F012485	GAG	VPSQEFSPEWVLSNSSSRTKEQSLRCDDELITVASRLWPRVQAHARKELANKNPDESAALAAEVWESVLQSVSKTLRRRNGKATGIVDLEAYLFGAFLHRFNRVLKKERKRQETIRLVPSNVDLAELPGARDTKSPRALEDSIQVKEIVRNMDDWTRKVWAARQYGYSWRETAEHMGLSEQQAKLRFRYALRKLAARLGYGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116111_1001738

Overview

Ecosystem & Geography

Associated Families

Sequences