Scaffold Ga0116111

Basic Information
Taxon OID	3300009616 Open in IMG/M
Scaffold ID	Ga0116111_1000053 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009616 Open in IMG/M

Scaffold ID

Ga0116111_1000053 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	108075
Total Scaffold Genes	104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	80 (76.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

108075

Total Scaffold Genes

104 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

80 (76.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)	1 to 1.25
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

1 to 1.25

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002289	Metagenome / Metatranscriptome	574	Y
F004753	Metagenome / Metatranscriptome	425	Y
F010884	Metagenome / Metatranscriptome	298	Y
F035732	Metagenome	171	Y
F063197	Metagenome / Metatranscriptome	130	Y
F091898	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116111_100005324	F091898	GGA	MFMGRVNGINQYKHGITRTYLYLDDAGNCHMKAEKGGYVPGNWGVELGKMEACLARLDASLATPYDEEFIVRKRNALQQQGISLLTIEVQPHDINIH*
Ga0116111_100005335	F063197	AGGAG	MTGTAATDTVPAAKANRTDSGTDQTLTRTRRSRTNSDEEANGNARYFLAKANDANGTTALDREVTSEGEALVEALRLGVTYYEVQEFRVVPDFAGRKPQLNKEAVNGK*
Ga0116111_100005336	F010884	AGGAGG	MVKQRFRVLFRRWFFTVAKVCGPILLFELFVLVRQHFQYVPLSISDLLMGALSAFLLTALLCWLWALGEWLWSRLRRLRGFLSELRQCSRSCWNPEAVRTNKV*
Ga0116111_100005340	F004753	AGG	MDDETDANDVRPHASREMGSDAQELIRDWEFLFWAFLMFGLARLAWLYLYRPENAAFHLGLSCGFVFCGVLGFLMRWVLSPKMKRH*
Ga0116111_100005348	F002289	GGA	MMVEPIVHLGRGVDLQTAVAALMKITETVEIARWIELPASVLLFLLVPGDPDSGAVYVLDRKKGTWYAVDFEDEQFGGYSVSQLETLLKECNFLDLIELPGLWRTGLQWVVLPGMVPEAAV*
Ga0116111_100005351	F035732	GGAGG	MHGRLKNYALVICLFVFLFVCIGNGLHLTPGAAFIGALSGTPLVIFAFNRWCDARCRGEEARREEPASEIIPLRERP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116111_1000053

Overview

Ecosystem & Geography

Associated Families

Sequences