Scaffold Ga0105228_122492

Overview

Basic Information

• Taxon OID: 3300009613
• Scaffold ID: Ga0105228_122492
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3737_250
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 588
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 6.4994
  • Long. (^o): -48.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001383	Metagenome / Metatranscriptome	709	Y
F004770	Metagenome	424	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105228_1224921	F004770	AGGA	MKASVNFEWRKKEEPDTSAEFYIRTALKAAGYHVGRVFVQGVWDEDKPKIPGGKWDETRLPHEEIAK*
Ga0105228_1224922	F001383	AGG	MKKFTIEVSNASTAQLSTIAAELKIMANAWTRFGPRIVINGHKLQAPSLRIPGSGRKHGPRNGKPQATSLTRPEL*