NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105228_121154

Scaffold Ga0105228_121154


Overview

Basic Information
Taxon OID3300009613 Open in IMG/M
Scaffold IDGa0105228_121154 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3737_250
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)610
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)6.4994Long. (o)-48.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003515Metagenome / Metatranscriptome482Y
F050302Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0105228_1211541F050302AGGAMNVDSRIITLALFLIAQSVGAIWWASGLSSEVNRLSGLVDKSDQFQTEIQ
Ga0105228_1211542F003515GGAGGLIKKTLTGIAIAMFCFMLYEVKAGPPEGMVRQMIPFPAMCLPATVAKNHFAVLMGALIQDYGVHISMTFSSSPDQSQRVAIIENPATGLAGVLMITDEQTCIAFSGEDRKEFIRPPDHPMGEDNEDTKT*

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