NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105229_105218

Scaffold Ga0105229_105218


Overview

Basic Information
Taxon OID3300009611 Open in IMG/M
Scaffold IDGa0105229_105218 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3747_4435
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1294
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)8.2514Long. (o)-49.9993Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053776Metagenome140N
F071943Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0105229_1052181F053776N/AMGLIFALGAVGCYVGLRMGASEIVTGALGSTVSLIGVLGMKVLESDE*
Ga0105229_1052182F071943GGAMNKLTVMRLALKHMDSCVVAVELIDDIEKMKREDGTIARSDRGQLMSRFWKLVKTI*

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