Scaffold Ga0105347_1000735

Overview

Basic Information

• Taxon OID: 3300009609
• Scaffold ID: Ga0105347_1000735
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14944
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9517
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054114	Metagenome	140	Y
F062895	Metagenome / Metatranscriptome	130	Y
F098309	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105347_100073512	F054114	AGGAG	MASSETPVVSFANRPMQAMSMDERKRPVPAYTIEPVKRTTTVNRTVKDEIGFRIVPTVVEIEGYMVRTLRGDSVFLTHEDALRLRLDRNLVPMLVEGGDDTPVGMVQASGGLSDRQKQALEAVTKLLEGDPDIVNKLLNSMPDVEQVDEKDK*
Ga0105347_10007353	F098309	AGGAG	MPAWAGGWDLQFGQPHALTQQATATMRSVARLTASVGGQHFGEIGRALANGVGANAEYTIAQVQARQHTSMDMGGKIPIAPYAVVPLHATTITEKEAFQAQMTPYFMPQPLAATPTVATSGYPVDKSGNGGGGKNGTLNG*
Ga0105347_10007356	F062895	AGG	MSDLPLANGLVIDTKTGQAILPSTSPDAVINQQAKKYKQSAQATTVRGRDRNNRAVRRGLVDLPADSKAVTTCGVVWLYFTLGINDAEIAEATGLKLSQVDMIKGLQLFQQLDTLLKDNIAALTSDSVQKRIDAMSASALDKLEDLVEDEETRPATKARVLMNMLDRGGFSPKQVMEHRHSMEGGLIIRHIREVAQPKQMPTIDVTPNVKGVK*