NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123327_1087010

Scaffold Ga0123327_1087010


Overview

Basic Information
Taxon OID3300009607 Open in IMG/M
Scaffold IDGa0123327_1087010 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1156
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029451Metagenome / Metatranscriptome188N
F079824Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0123327_10870101F079824GGAGGMIYGFFGSIPGCPHSRGNHALRGNGKTLCLTFVGYLDAQRGRRVISNYKTSFSEYVAVDEIARMVVEENIRDTTILITEMQVYLNSLGVNSSDLKEFIGSVVGQSRKRNTDIHYDTQRYGDIHPRLRVQTDRAFLPRKFHVDGEPCHRDRCKENHVIYLFQHDPYLHEEVIRLKAEAFADLYNTDEIIAVPKRNSKRRKT*
Ga0123327_10870102F029451N/ALLSTVDSIFTNNRMLQRSRLSARNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYSRYDNRVLTAICEGALSGRISLDGKSRDEIIRIFQAVGNTAQEESVGRGGGLLGRFDY*

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