Scaffold Ga0123327_1022315

Overview

Basic Information

• Taxon OID: 3300009607
• Scaffold ID: Ga0123327_1022315
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3053
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus sulfaticallidus → Archaeoglobus sulfaticallidus PM70-1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080199	Metagenome / Metatranscriptome	115	N
F103498	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0123327_10223153	F103498	N/A	MKKMGSTESCELQHCRLRTDILCEVQRREEKQDERFYALIDELRLDWKETKKEVISIKDTMIQGFIALIVAVIGVYVSYLLLNVNGFF*
Ga0123327_10223155	F080199	GGAG	MKIMVQGVEETNLKLSQILAAVQENVDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKEALKYAIVSQNSYVPYNTVLVFGTEKFKPIANEPRYKYPDSDRGIIHDVRQIKFIYSVKLGQLIKRVNLLNANISLAGL*