Scaffold Ga0115102_10225984

Overview

Basic Information

• Taxon OID: 3300009606
• Scaffold ID: Ga0115102_10225984
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4796
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007892	Metagenome / Metatranscriptome	343	Y
F037230	Metagenome / Metatranscriptome	168	Y
F061271	Metagenome / Metatranscriptome	132	N
F076593	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115102_1022598414	F076593	N/A	MSLTEHQKNELNTVADSIAYYIEDHLRETISWQMPDSLVIDMQEEQFMDAMGYAYNKVLQLITE*
Ga0115102_1022598415	F007892	N/A	MGRLIEISPQQDVVNKINAKADFTHNINQTRLERYTVSIKNVFTGKNPSLFLKDTWKVVDDAFNSDQELLGGWLSEDDIYFLDYGLSVTDLKKAMKIAKFNKQL
Ga0115102_102259845	F037230	N/A	MKNLTEEYVNIDWMGICSNFDLEHGDISPEQSFEIDRALGNINEVIHAFIDQNKTKTMKTTAIPALTLTNTEYNVLAVALDHMYEHLNDLAGDFNTFEEENINLKRIVDVQSLKEMFNL*
Ga0115102_102259849	F061271	N/A	MQELDKVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKDWCVSDKGLTAFYKQMLYTFAYENGNVPEHCFINSCMWAYHAAISEYEHNNCKIGNATKCYKKQCCR*