Scaffold Ga0114906_1275009

Overview

Basic Information

• Taxon OID: 3300009605
• Scaffold ID: Ga0114906_1275009
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 541
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.38
  • Long. (^o): 4.65
  • Depth (m): 2720

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011853	Metagenome	286	Y
F042929	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114906_12750091	F011853	N/A	NKEEVMKPEDIKKKKEMLIKQHNTLKEKMDEGKTAIMNMQAQLNGLVGAIQLCDDFLNNPKKAEKDK*
Ga0114906_12750092	F042929	AGG	MMGVWDPGREKTVLSQIKRAINAPVSRLKRMTRVIVPGILICFYFFIFFLLLSGCAYFKKEKKDEIIITDLPPREFICTKIDCGDEDIDKLVEDEQNTIACIKLQPECKLDEE