Scaffold Ga0114906_1178752

Overview

Basic Information

• Taxon OID: 3300009605
• Scaffold ID: Ga0114906_1178752
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 719
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.38
  • Long. (^o): 4.65
  • Depth (m): 2720

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002834	Metagenome	527	Y
F066698	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114906_11787521	F002834	N/A	RLNNRKDKMFYITYFAKKHAKFITRKGQYDKPDGTKGKSFVSKQGTPCLVYWDLDATPDEKGNQWRMAMGEAKVMWS*
Ga0114906_11787523	F066698	GAGG	MKYPCQGPNCHTRATKDRFNKSTKRLKGRNAYFTVDYNDENHSSPFTIFCTTGCQHDWINANVQNIVAQRPITFNRERKLSEQTYHI