Scaffold Ga0114906_1072849

Overview

Basic Information

• Taxon OID: 3300009605
• Scaffold ID: Ga0114906_1072849
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1270
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.38
  • Long. (^o): 4.65
  • Depth (m): 2720

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F034953	Metagenome / Metatranscriptome	173	N
F046426	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114906_10728492	F046426	N/A	MFSTGCSILPELVAPAANFAIGFYDHDDYYSKECLWYDEVKLNEATKKWFLENNPPEVVSKDLAVVSRNNDIYKEVCEREKGMLEKVEDKVRRLTDE*
Ga0114906_10728493	F002078	AGGA	MEMFMSQAWFQIAGEIVLMFTVITGALPDRWVQKIPILGTMWPMFNWLAGNIFNNINHPKGMAAKVEVEKEIDEAKAKVRDRIGMPDVLDGM*
Ga0114906_10728495	F034953	GGAG	MKQTQLILLIKKYEKDTPVIITWKDAVDYYDEVTYDKIEIKEVLYDTIGFFLKIKDDYIVLSYNKENDKKTYKGTAMIPCSLVTDIRRLTDGYE*