Scaffold Ga0114906_1010326

Overview

Basic Information

• Taxon OID: 3300009605
• Scaffold ID: Ga0114906_1010326
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4070
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.38
  • Long. (^o): 4.65
  • Depth (m): 2720

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003270	Metagenome	496	Y
F004794	Metagenome / Metatranscriptome	423	Y
F030781	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114906_101032610	F030781	N/A	MWLEDMYVSVFAGTPTVSQSISGYGTFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDITQSATTRFIMGVGYTKQD*
Ga0114906_10103268	F003270	N/A	MAKKRRRRSSKKRNGSKSIKSMIRQIVNKGSAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGVAGKLYGKIGKSMKLPEASMIDKVGSKLIFGGAVGGFFDPPGNPGGYVSTANVTPNVIVQNRSQTNRAFATAQRNRSFVPVDSFDYSTGSAFR*
Ga0114906_10103269	F004794	GGAG	MSGAWDIATASSLGTGVAKTTINGGANLTKPTQAVNLVETVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRMIVPPVQAGLGTLINIVAPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMGMALHYSTTPPIDQNTSTINLMMKVALQLQQQMQETISQSMTVCG*