Scaffold Ga0114901_1086461

Overview

Basic Information

• Taxon OID: 3300009604
• Scaffold ID: Ga0114901_1086461
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1008
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured Mediterranean phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.24
  • Depth (m): 2766

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029130	Metagenome	189	Y
F043980	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114901_10864611	F043980	N/A	INHILDRFNKEYGFMIERVGQQKAMAEWLSGLALDIEYYYDDIVKLAIKMGSIEENPSEKLQARVKENYWNFMANVILGFKK*
Ga0114901_10864614	F029130	GAG	MTDKPNFILVPNRLDPKYWIRKNRHNADNLELSKMIAKHLILHRIWHGLTQNKIALDLSVSHQQIQKFESCTNDIFLVQVLKIFKNRKWNIEILGSNPHDVLIEWLKHDYYNSDKYPDKYHKIIDAWKLLDLKAEKNYYKK*