Scaffold Ga0114901_1031081

Overview

Basic Information

• Taxon OID: 3300009604
• Scaffold ID: Ga0114901_1031081
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1977
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.24
  • Depth (m): 2766

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F026154	Metagenome / Metatranscriptome	199	Y
F090327	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114901_10310812	F003677	AGG	MVDQALYFFEKDVGKKVYEMEYEITYVTKWQILAEDKDQAFKIWLENHKVDIATEDGKDVVCSYVKDYTQIGSTKEIAKIKLDIDNDEVIADES*
Ga0114901_10310813	F003834	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKISKMHDEVRTLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYSGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDQEMGKEKINTNTIPKPEFLAITK*
Ga0114901_10310816	F026154	AGGA	MNGIVNIVRFVAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDDEYYQTKTKYIRLTKLKEEHEAYRKNRRSDS*
Ga0114901_10310817	F090327	N/A	VNQPFAIFDEWMKTIDPYEDESPYPLRISQIIKAWEKIDNVGKLNYLSRQTNPRYKEIMKGN*