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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009604 Open in IMG/M |
| Scaffold ID | Ga0114901_1018196 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2786 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 39.48 | Long. (o) | 7.24 | Alt. (m) | Depth (m) | 2766 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F050424 | Metagenome | 145 | N |
| F090413 | Metagenome / Metatranscriptome | 108 | N |
| F104032 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114901_10181962 | F104032 | AGGAG | MAVSGKVYSKSDFSVGIINKNATAFETAEANDAAYELLPVINVSAPVLNLVESGEIRSNNAGMVELDIDQFRTTKGGFITMDFEVPAERDMLVRMLANVLQDHGESGSGPYVHTIQATSSAALARPDFTGSSTAGVPSIFDIGLYYPESAQDKMLTSAVIQSLTMNFDMADGRCLLSGTFYSGFTSSGKFLVEQTLSANSAAPTLMSTSPTQIESYFDTKKLDVDGTSLADMVITAVSFTFENNVARVGRDSNGDAEAYAFGIPSVNITGEVSLMYDANFDFASGGNVLQDFLSGNTATLKLQQGDGTVSTAGEMNIECEIYSTAVNLDPNADTGAVITIPFKVVQPTSSGAASGTAFKFEYADSTPSSGW* |
| Ga0114901_10181963 | F090413 | GAGG | MKYKHIKGLQLQKPSYLNTPNQKIRELLDGKEVELEKENLEEFESLGVQVQPIKKQKPKKKEEK* |
| Ga0114901_10181964 | F050424 | GAGG | MGIEFENIYKDRIIDTIQKLLKQNLASIPVLFDEHRGQESFLIVPESDTFIDYASNVHIREFTTVINYQLRKGGEYTKENQLNRLTMVAEIVKRLLFDNRNYESGNITNWYGGRVSSVEYTRDEEDETISNVIITFQCNTNEVIS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |