Scaffold Ga0114911_1090223

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0114911_1090223

Scaffold Ga0114911_1090223

Overview

Basic Information
Taxon OID	3300009603 Open in IMG/M
Scaffold ID	Ga0114911_1090223 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	903
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.49	Long. (^o)	7.9	Alt. (m)		Depth (m)	2455
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038405	Metagenome / Metatranscriptome	166	Y
F039339	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114911_10902231	F039339	N/A	MKLVLEKRQHTDSDGIVYRYTLYDNNEFVEDFFETLAQAWSYIYYYDEEREYENLRPNIESA*
Ga0114911_10902232	F038405	N/A	LTKALERGAEVSFMYHGKRRNGPLKDFGWGPQGPFITIEHKKYSLGLQDQNELLENGSTKPGYQTEIKSFSLAKMSELRIEQFVVAGEE*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.