Scaffold Ga0114911_1010560

Overview

Basic Information

• Taxon OID: 3300009603
• Scaffold ID: Ga0114911_1010560
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3343
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.49
  • Long. (^o): 7.9
  • Depth (m): 2455

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010471	Metagenome	303	Y
F013377	Metagenome	272	N
F021206	Metagenome	220	Y
F036003	Metagenome	171	N
F089518	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114911_10105601	F013377	N/A	SIQCEVIIMTRKILKHWALFYKHNERQFISAPSKEELDRAIFAGAYAPSPNSVTYYVEYERDIKDTRYNQVHEV*
Ga0114911_101056014	F036003	AGGAG	MNTRMFNYKDKSVMFINCSLKHCYNTADYMIKRDKNNGYWKPRLYDDYDQDHSSVESIYDWIEIKDSVTDLPPVTTDEIERAYNEIQ*
Ga0114911_10105603	F021206	GGAG	MTVTLNQILAMENVLATRKIPSDIEAMAKVKRYSNSKQKEITLGEQPLHYVLRILAKEGL
Ga0114911_10105606	F010471	AGGA	MQLTLAINTNAYPEYDKRQLNEMLGLLPLWVAEHVGNDDNTDIVQFMTDRYGFGKLYKFDGKINKKGDYVSNYDDDADMPYIGKMITKDGYAYFYDCAIVALPQPDGKYFITRMD*
Ga0114911_10105607	F089518	AGGA	VEYIIHISKKGGECFAYHSTKDTSELDRLVAKYLKMRGITIEVKKRFLS*