NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114900_1117862

Scaffold Ga0114900_1117862


Overview

Basic Information
Taxon OID3300009602 Open in IMG/M
Scaffold IDGa0114900_1117862 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.48Long. (o)10.16Alt. (m)Depth (m)2304
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028194Metagenome192Y
F040136Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0114900_11178621F028194N/AKIMHPSKEEIESRKKELQKQHDDLLVKLNQGKEAIRNMESTLISLQGAIQQCNWTLELFKEEKKK*
Ga0114900_11178622F040136GAGMEVKSATGDGIKDGTRETERDTSMDEMRPRGKWSDSELNQVKFLKDYKSASEVGKIFGATKNAIIGALYRDKVKNGYVPPEDSKYTGPKNL*

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