Scaffold Ga0114900_1027986

Overview

Basic Information

• Taxon OID: 3300009602
• Scaffold ID: Ga0114900_1027986
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1925
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.48
  • Long. (^o): 10.16
  • Depth (m): 2304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040140	Metagenome	162	N
F068933	Metagenome	124	N
F081448	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114900_10279861	F081448	N/A	KDLRVLSPKKDTALACLLSGIERVETIPTWVKTSWFNWIFYAMRMISDKEVDALAESMSKGLEEYKMAYFSQEFIESLPKEKRLAAEALLQPHLLKLKGSGTTMSETLKEWRI*
Ga0114900_10279863	F040140	GGAG	MLSCKLSMPKFGKKFEDTGYDGSQHWKVLHDEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKALHPKDLDFALKHFVWSKKQLEPGLKCELC*
Ga0114900_10279865	F068933	GAG	MSKLDLLKQLHRELLMPKALPGMKGTIGRPSDLIPVHAAGQLKGYWKNVKHKPAT