Scaffold Ga0114900_1019738

Overview

Basic Information

• Taxon OID: 3300009602
• Scaffold ID: Ga0114900_1019738
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2467
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.48
  • Long. (^o): 10.16
  • Depth (m): 2304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012984	Metagenome / Metatranscriptome	275	Y
F015739	Metagenome / Metatranscriptome	252	Y
F031531	Metagenome	182	Y
F089026	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114900_10197381	F012984	N/A	LVLVVAVSIPEPLTEIQKKQYLTELGLEPILAYYNKEIRKHDHICFKKLELFEKRDRCFKLMREEYRELV*
Ga0114900_10197383	F015739	GAG	MIRPEKYQFNWKPKTKSKEDLELVKILEQLLKDLDLTKTQLTRQALEDFVTLTKKLKKV*
Ga0114900_10197385	F089026	GAGG	MTRPYKTIKNRFITEFIPKYSDDSNRHFIQVLKKWRDLEK*
Ga0114900_10197388	F031531	AGGA	MLFNPDTNTYTDLKDGQLLAKMEQKEQVSNFEDLYVVELEREKTLVIKKITNEAWSEETKKRGTFFLEERNRDKKGITLTKSDCGKIAIMLKEISEK*