Scaffold Ga0114900_1014138

Overview

Basic Information

• Taxon OID: 3300009602
• Scaffold ID: Ga0114900_1014138
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3112
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.48
  • Long. (^o): 10.16
  • Depth (m): 2304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001992	Metagenome	607	Y
F043446	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114900_10141381	F043446	N/A	NLSKKKSEASGNTDGQLDSLIDNAPRMLNEVNKIIAEQKSAGVPDEQMKGILQKKQLLELVSNNAEVINIIGKPVLKKLLGFVRTF*
Ga0114900_10141382	F001992	GAGG	MVVQSLIAREVIKKGLKSSREFSVSTLGYDFIGLFIRLAFFLLMGVLVQSYFTATIAGGNWLNSVAGFFNIKFPATFPEWVVKLFTTGYNGIAFWQILQISAILLVLIEYTQYDRMLKEQGQKPNVTTTAVFLMLGLGLSLLVFPSTIQKIKEMRIING*