Scaffold Ga0114914_1008252

Overview

Basic Information

• Taxon OID: 3300009601
• Scaffold ID: Ga0114914_1008252
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1941
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Orkney Island (southeast)
• Coordinates
  • Lat. (^o): -61.27
  • Long. (^o): -43.92
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030882	Metagenome	184	N
F072753	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114914_10082522	F030882	AGG	MDFKGLVDHYQTLPKSELIEKLVFKNATLLNHENVIEKLEDEVKRIEEVDKGHQQLNGELSEKISQLQKQKEILQKAIRKPGENDE*
Ga0114914_10082526	F072753	AGGA	MEDNKENDHIYLSKIKYDCLDFISTFIKQYKFSPTYKEIAEKFGFSRARAGAICAELFKLGLISKGLAAHRKIRLSKKQISQIPNLSFNREYS