Scaffold Ga0114914_1007604

Overview

Basic Information

• Taxon OID: 3300009601
• Scaffold ID: Ga0114914_1007604
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2017
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Orkney Island (southeast)
• Coordinates
  • Lat. (^o): -61.27
  • Long. (^o): -43.92
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052039	Metagenome	143	N
F059365	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114914_10076041	F059365	GAG	MMDDRLLDVVARMSELTKEVSDAEWDQDPRFEALGAELRKLKALHNK
Ga0114914_10076046	F052039	N/A	DDNFYKESAMINLRRHKVRGDWLFIQSDYGYGKASIEVEAYQLSNNYGECYDAWPSKGFSWSAANLAKKVEELEA*