Scaffold Ga0114914_1000188

Overview

Basic Information

• Taxon OID: 3300009601
• Scaffold ID: Ga0114914_1000188
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14945
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Orkney Island (southeast)
• Coordinates
  • Lat. (^o): -61.27
  • Long. (^o): -43.92
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016211	Metagenome	249	Y
F028321	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114914_10001887	F028321	GAGG	MLAEIAIANAIWKTLSTALKNGKQLYEVGGQVNDYLSATQKVKDKAGDANSRGTALEAYQFAEQQRVQRSQLEFHLKKSRLNGWSDFVKFEAEWHRKRKEEEQSKINARIRRNNKLQNDVALAINIGICMIIALGLLFGIAVYMKGYY*
Ga0114914_10001888	F016211	AGGA	VSDLTKAEKNEIAELAADKAYERFYLAVGKSVTKKIMWIASAVLFTCWIYFKEGTF*