Scaffold Ga0115103_1883316

Overview

Basic Information

• Taxon OID: 3300009599
• Scaffold ID: Ga0115103_1883316
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1122
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.754
  • Long. (^o): -122.0208
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003647	Metagenome / Metatranscriptome	475	Y
F005817	Metagenome / Metatranscriptome	389	N
F082713	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115103_18833161	F003647	N/A	MAMCEWTLADIKNRASNKAFAKVTILGLDIEEQKRNLKNGTYGGITHAEAEQVLEGYKTELQVWNYITELIEKQ*
Ga0115103_18833162	F005817	N/A	MRSNLLSRLKPEFKKGLENNKVRYPDMINDIEFLLTQLFYYDDLTVRQVLNIFVFSDMEYLDRKSFNWRYGEDVFEIENNVA*
Ga0115103_18833164	F082713	N/A	MKIKGLTEEDCAFVYYVLRDWSQNHENYEEQDVDDVYQIAKKFKTY*