Scaffold Ga0115103_1860531

Overview

Basic Information

• Taxon OID: 3300009599
• Scaffold ID: Ga0115103_1860531
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14966
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.754
  • Long. (^o): -122.0208
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F008595	Metagenome / Metatranscriptome	331	Y
F015474	Metagenome / Metatranscriptome	254	Y
F018357	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115103_18605311	F001942	N/A	MPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLIVEFGNAIYTVQVKSRRATKEKKFVFAAENSRAMSDTYKNYPCDILAFVFFFDSQKRIMFKSNTSSQNYFTFDKKIITDTMELDSLQESLDTLSSVPVLNPII*
Ga0115103_186053110	F018357	AGG	MVQNNIQANSSGALTLQISPNLVTSLANNEAVTVNKPSFTVYLENNEIMYSTDASGFYSISFDVREVII*
Ga0115103_186053111	F015474	GGA	MSGQFPTNPNFKSLNFKDNRPTLVNQTLSGKKQVRQIGAQYFSFTVSMPPLQQEKAQEVFAFLQNKKVLQETSQ*
Ga0115103_18605315	F008595	AGGAG	MSNEENNMENQDPVIITFNDVEYRQADLNEEQMTLAAKLNVAGKKLARLQEDYDDYVITNEYKNICIESFDRAINPKDVEEAEVVEEE*