Basic Information | |
---|---|
Taxon OID | 3300009599 Open in IMG/M |
Scaffold ID | Ga0115103_1860531 Open in IMG/M |
Source Dataset Name | Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 14966 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 36.754 | Long. (o) | -122.0208 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001942 | Metagenome / Metatranscriptome | 613 | Y |
F008595 | Metagenome / Metatranscriptome | 331 | Y |
F015474 | Metagenome / Metatranscriptome | 254 | Y |
F018357 | Metagenome / Metatranscriptome | 235 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0115103_18605311 | F001942 | N/A | MPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLIVEFGNAIYTVQVKSRRATKEKKFVFAAENSRAMSDTYKNYPCDILAFVFFFDSQKRIMFKSNTSSQNYFTFDKKIITDTMELDSLQESLDTLSSVPVLNPII* |
Ga0115103_186053110 | F018357 | AGG | MVQNNIQANSSGALTLQISPNLVTSLANNEAVTVNKPSFTVYLENNEIMYSTDASGFYSISFDVREVII* |
Ga0115103_186053111 | F015474 | GGA | MSGQFPTNPNFKSLNFKDNRPTLVNQTLSGKKQVRQIGAQYFSFTVSMPPLQQEKAQEVFAFLQNKKVLQETSQ* |
Ga0115103_18605315 | F008595 | AGGAG | MSNEENNMENQDPVIITFNDVEYRQADLNEEQMTLAAKLNVAGKKLARLQEDYDDYVITNEYKNICIESFDRAINPKDVEEAEVVEEE* |
⦗Top⦘ |