Scaffold Ga0115103_1644760

Overview

Basic Information

• Taxon OID: 3300009599
• Scaffold ID: Ga0115103_1644760
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2484
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.754
  • Long. (^o): -122.0208
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031863	Metagenome / Metatranscriptome	181	Y
F053967	Metagenome / Metatranscriptome	140	N
F056582	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115103_16447601	F031863	N/A	LYVVKRKFRIEHFEKVMQHFGANEVCENYHCETVLKGRDGYYYLCDKVDDAEIV*
Ga0115103_16447603	F056582	GGA	MARYKTYKIEKTPTDKFTEMVTISKKIKGEIVERKFIDEEKAKAWIENGAAFKLINNGAKKVKNELGSIGIISEPAW*
Ga0115103_16447604	F053967	N/A	MVEFDPNNELSEEELNKLGEENFDDFLDYLDQKAEHLKQFTKPLSSYHTKRYASISAASQGKELSKEDIKKAGEIGKKNEDAAAAKIADRLAEYEKNHPKYKDEGIKNIKTNRSQWFG*