NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105214_114157

Scaffold Ga0105214_114157


Overview

Basic Information
Taxon OID3300009595 Open in IMG/M
Scaffold IDGa0105214_114157 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)598
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)1.4995Long. (o)-36.9978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034345Metagenome / Metatranscriptome175Y
F087760Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0105214_1141571F034345GAGGMTEEKELLEFQHKLWELIRETSPPDESKADILMVSGALLSTCLKLYVETIGKESTIGMFNVAIESVNY
Ga0105214_1141572F087760AGGAGMSETEILKRNVRDLQEQLQNSHIRIKKLRAKLMQNEKLIIMLRKKP*

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