Scaffold Ga0105214_100478

Overview

Basic Information

• Taxon OID: 3300009595
• Scaffold ID: Ga0105214_100478
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1550
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 1.4995
  • Long. (^o): -36.9978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F013820	Metagenome / Metatranscriptome	268	Y
F015741	Metagenome / Metatranscriptome	252	Y
F022754	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105214_1004782	F015741	GAG	VAPAANFAIGFYDHNDYYSKECLWYDEIKLNDETKKWLLESNPPEIVSEDLSKVSRNNDIYKEVCKEHKSVADKLRDKANRVIDKTLP*
Ga0105214_1004783	F002078	AGGAG	MDIATMFEGQGWFAIAGQIVLIFTAVTGALPDRFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAQSEVEEEIDKAKANVRKRSGMPDVLDGM*
Ga0105214_1004784	F022754	AGGA	LNEILVTIMLVIPSPYKMVDWTVNEVPTQIQVIHKSGLSVSYTATPVSCNFKPRHKREMIFRSPMDRCYSVFDLSSPRFVRHPDPDHWYKVELPKLR*
Ga0105214_1004785	F013820	AGG	MIMVPTIISFIDKLWPGGKTYALMGLGVLMTICQMGGWHNFSPEAWGLLGIGGAATWKMGADRK*