Scaffold Ga0115011_10232000

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10232000
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1377
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035487	Metagenome	172	Y
F047913	Metagenome	149	Y
F060341	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_102320002	F035487	AGGA	MNIGDTITLKALGSATKRTKNRIHNRGKSGFKVRQAPRRATFTDNRGAEWIQLDAIDNDWSGWLPMDEIEITSTTIK*
Ga0115011_102320003	F047913	GGAGG	MKVGDLLRHNGNHSLWLLLELSGGFPFEGYSILALNPKTGYKMWADPKTFEVVSKCQENVKSDKLSLQSPSQRVTL*
Ga0115011_102320005	F060341	GGAGG	VKVGDLVKFETSKSLSIGLVIETGAYVGNKDVKVCWNGEDIYTEYSGVLEVINEAR*