Scaffold Ga0115011_10162857

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10162857
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1626
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012463	Metagenome	280	Y
F029745	Metagenome	187	Y
F040056	Metagenome / Metatranscriptome	162	Y
F073529	Metagenome	120	Y
F077179	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_101628571	F073529	N/A	LRKGRYDFSATAKAKWEWTDVLGVITDDRGFVDGTAEYKVYTVDNKHSWEHIEDLRIPD*
Ga0115011_101628572	F077179	N/A	MEVRTVTQDDYKPGDLILFFQGNSRFEEGPEEFGWIVHRDHDDPSEPAVMVGFPGRPDNLLHYYDLELREWEKAGTIEVKRG*
Ga0115011_101628573	F029745	GAGG	VARKAPKVGDVVKSRVTTESLAGYIVAKEGIHVWVRFFDTDFEAGDSWDVYTRRDTLEILSYANPR*
Ga0115011_101628574	F040056	GGAG	MQTHADFRIGTLVRWHGEDTEGADIDELGIVIQIPRSVEEGGKYPNQYHIAWSITKAVTHHSPEMVEESLYQQQMEIIR*
Ga0115011_101628578	F012463	GGAG	VKIGDVVKLIEKPALDWMEDYRDKTFRILDFPSETVVELMMIGSRPEWVWCIGKANLEVTDENR*