Scaffold Ga0115011_10105102

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10105102
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2000
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042854	Metagenome	157	Y
F062279	Metagenome	131	Y
F064629	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_101051021	F042854	GAG	MEITLSEFELERYTRRRMRELRGDAPELQYVDPFIERYTTQRIREMRLEHEMEQREIDLDNVALGGYTVATMEAYSGKS*
Ga0115011_101051023	F064629	GAGG	VTRLYEDVAPELVDHPARKGLRNFTWTNDAINDWEAIWHQLWRFGYKWEWQNADRYARRRGDTFNLFAVHNDAVRLDMAIPLPGIHVIEEVREMILGDANDSPELDHLIAAITRWLKTHYAP*
Ga0115011_101051024	F062279	AGAAGG	MYERMKALLRRCVDLVVAMILVAAMLAYLMINSVIATQVINDLQLDTYVTYETGFGVVMLVLLLGWGPVWLMRTLDNNR*