Scaffold Ga0115011_10086020

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10086020
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2198
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC031P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F049758	Metagenome	146	Y
F084722	Metagenome	112	Y
F099992	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_100860205	F099992	GGAGG	MIQVQLNLPLYDNNGKSVKKIHKQLVVELCSKFGGCTTSSGRGKWIDNGKLYNDSLNIYQVAIDKKLKNLFIKIAKKYGIETGQLAIYLVINGQVKIINL*
Ga0115011_100860206	F002485	N/A	MRTQIDSKNLWFANQGDNTIYYSYNTTVAVKTPIDTYVSENVWSITTAKHLNRIEELTGSDREYRMKYKDFRNFCINNNVNKHYI*
Ga0115011_100860207	F049758	GGAGG	MYHIILWLSLIFGSVLSVVIFQNVFLSLLLFLIFSINVAYNFSK*
Ga0115011_100860208	F084722	N/A	LTQLIGEKMSTSETKIYMAIRYPKNWTGKKDIKIITLEEHLKKYNSVCDNIGDGLQLFLNEDDAKKHHIKVNK*