Scaffold Ga0115011_10067191

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10067191
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2475
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F028524	Metagenome / Metatranscriptome	191	Y
F067209	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_100671912	F028524	AGG	MTTINNDFESTVKEFVSKLTNIENEMTILRQDRSELFTEMKSKLDPRSFRAALKIHNLQKSTPDQTSLTRILEVLETAE*
Ga0115011_100671914	F014071	GGAGG	MAKRPGRLIDQTFTSFTEASGRLDDTIGWVTKAKDLAHEFEPGCKAEVTLHLLEEVLEKAGRELDRASTELAMEVFGDK*
Ga0115011_100671916	F067209	GAG	MLEPTDEQAELSMTEWVTKFGDGRDQKQTAELAAKFMFAMSYYHDRMRLHIMLHPLFFVAGFLAAFWVL*
Ga0115011_100671917	F005620	AGGA	VTEEEVDVKHINTFKTFCKNNRLRLREAGDGLPVAKAIGKFKEDQFFCNFKDGTIGVYVTRETQRQFTYLHKKLTKLGCVATQLGDFEGAYDLEWMNIPPVARLLKIKKGAAKVKDPKWLRE*