Scaffold Ga0115011_10025091

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10025091
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3989
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002768	Metagenome / Metatranscriptome	531	Y
F013362	Metagenome	272	Y
F075988	Metagenome	118	N
F080519	Metagenome / Metatranscriptome	115	Y
F087768	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_1002509110	F075988	GGAG	MTNKVSQWLIDYVKKKNGVDLTNVPSDKSWTELNPFRDSTILSDDVIKFINEKNSSGIQSSMDKVEKANDDSIKQEKQLNTINKGE*
Ga0115011_1002509111	F002768	AGGGGG	MSSEKLKTSWWSLTIQDYPNYKPNETDLEHIAKCIKDGYDQGQLIQEEEDE*
Ga0115011_1002509114	F013362	AGGAG	MSSEKQLLLIILVGVIVLGYQWYKDKKKNDYWKKYRRSQGWE*
Ga0115011_100250912	F080519	N/A	MKTKTTKEKTMAKNSCKLCDEKPSIIWTQAFNTYICKPCMTINADTHNDKIGKYPNNYIPSDYYTLINN*
Ga0115011_100250913	F087768	N/A	MTKKLKQFNMYTFNVGKFCYTETETVEQAISNFNKRLNLDPNGYAHPNMNYNFTPIRIITEQKINDEIELDRCNSETILKFNMNKLNHLILKEND*