Basic Information | |
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Taxon OID | 3300009593 Open in IMG/M |
Scaffold ID | Ga0115011_10023945 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4081 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Tropical Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 15.249 | Long. (o) | -20.515 | Alt. (m) | Depth (m) | 55 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F018268 | Metagenome / Metatranscriptome | 236 | Y |
F023445 | Metagenome | 210 | Y |
F026125 | Metagenome / Metatranscriptome | 199 | N |
Protein ID | Family | RBS | Sequence |
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Ga0115011_100239452 | F023445 | GAGG | MDEHFVQGVVGGVLNRHKNRTLDKNRIAVLAVEIAANIERATQFTDVIKDTKLAKDNPLTMEMWKGKNYDKEYLEYWTCELCGEHTHEVDYDYLGSNRNHLKCELQYELEYKEYLDKPKSKSKGKS* |
Ga0115011_100239455 | F026125 | AGGAG | MFNFIDSWKSRKKPQWNIEVRLGRVTLLQLNYKSNKVRFMLLNWGIEYGA* |
Ga0115011_100239457 | F018268 | N/A | MKARVVFDYPTIEGMIYKDTIMVCEESEFNSRIQDEKVKGKMETGQIVWVPKKMLKKM* |
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