NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115011_10009950

Scaffold Ga0115011_10009950


Overview

Basic Information
Taxon OID3300009593 Open in IMG/M
Scaffold IDGa0115011_10009950 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6329
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010091Metagenome / Metatranscriptome308Y
F014085Metagenome / Metatranscriptome266Y
F022423Metagenome / Metatranscriptome214Y
F025614Metagenome / Metatranscriptome201Y
F040134Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0115011_1000995010F025614N/AMKHMGKKPFDVNDVNIFTHPKYMKVWAQQFNKACGSDTFNVGPDMKKLRFLMDKFVIDYNYHLGQLEEE*
Ga0115011_1000995012F014085N/AMDSLSELREEAMQRAGGRCEWAYCNDNKWLELAHIQGIGMGGNKKRKFDINNVAILCKHHHDIYDGRQRVGTSVAYRDLLKGFLKRESNRF*
Ga0115011_100099502F010091N/AMDINELLDEAENGKRTAILSRITDEAKPFWDGLEDRVKAGRPVKPFVVSRLLKQHYNIKISETAVRHHFQNIVDANVKES*
Ga0115011_100099504F040134N/AMTINNVKSKWHLQSIEYSGLGDKPNFILMNDEGDFKMVPIERGIHNLRKLLDLEIE*
Ga0115011_100099506F022423AGAAGMQDLEFIAKTIQSMTTDVKNTETLHKIMGLANDYARTMKFPNRKTDWTDEQLTKYFNMIEKLVDMPVEYSDIDFESMDIQEKLKAVGLDSTDITPGLQDSSGIVGEVINKMSEQAKYRKDLKCPYCQSMVYDNRNSKKSDKSPDFTCSKNDPVICGGHTGKWRKSWWLDNSDIPEEWGV*
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