Scaffold Ga0115011_10005898

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10005898
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8245
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F022282	Metagenome	215	Y
F031481	Metagenome	182	Y
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_1000589813	F022282	GGA	VNPSFRYQLGDLVEFKRTARVTEEYIDVEKVSGIVVEQRYVFTADNKFKVRTPDQDYWIRADHLTLLSSGTK*
Ga0115011_100058984	F006383	GGAGG	MHDKMWKVQQPGTILRARHSGRRGQLALVLARASSGPRPSNGYPPTEYVKMQIVSTGERFEESLTNANNCWDIVSEP*
Ga0115011_100058985	F021674	GAGG	MERETYNTRLKSNPENIPMGSLLRVKKHCRKNVTITQNGEYGLLVAPINNGKYITHDVLFPNGNRCIYLPLNWEVVSYAR*
Ga0115011_100058987	F105878	GAGG	MKVGQIIKLNPQGLKNFAPGIRQRLDGQIGLVVRQKYDLSYKLDQEKLPDRIRVYPSLVRFDELGDILGVDDNTVMVFPDQAEILS*
Ga0115011_100058989	F031481	GAGG	VKLGDLVKRQQGWMGWERQRLGLVVMVDRAVAKVQWSGDYGTFLHPTTSLELINEAR*