Scaffold Ga0115011_10001677

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10001677
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15870
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (65.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023709	Metagenome	209	Y
F042009	Metagenome / Metatranscriptome	159	Y
F051452	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_1000167729	F051452	AGGAG	MTLTTEQIVSKHINRIIWERMNKAMASQGRTFVWNPRSKYHVKRKIRKVRVTYGGNVELTFWTPLKGRLSKLFTIEPTIDCMEDFSIID*
Ga0115011_1000167732	F042009	GAG	MICSNCGIVISKGIDIGHYWNNPPDSVYACSDRCAEEAPKNWLSDNPTPLYKNKFKNTTKGKSPNFDK*
Ga0115011_1000167745	F023709	AGGAG	MKTLSELKTYDAVLRMSRFSTKRKGNEKKEKSRKACRGKRVIYE*