Scaffold Ga0115011_10000591

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115011_10000591

Scaffold Ga0115011_10000591

Overview

Basic Information
Taxon OID	3300009593 Open in IMG/M
Scaffold ID	Ga0115011_10000591 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	28909
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Tropical Atlantic Ocean
Coordinates	Lat. (^o)	15.249	Long. (^o)	-20.515	Alt. (m)		Depth (m)	55
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023709	Metagenome	209	Y
F098023	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_1000059118	F098023	N/A	MKDVRTDTYVADEIKKRKLAKILVNATDDKKMIKGKPAFTMPHHTGSSTIYVYLRKMPGPSKGVMAYNYELKL*
Ga0115011_1000059134	F023709	GGAG	MKTLTDLKKFDAVLRMTRFATKHKGDDKKRMSKKLCRKKVSWE*

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