Scaffold Ga0115011_10000523

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10000523
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31121
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (65.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F000659	Metagenome / Metatranscriptome	952	Y
F000942	Metagenome / Metatranscriptome	826	Y
F009558	Metagenome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_1000052314	F009558	GAG	MYRRKSWEAKHYWVNQFGVIEHDIFAHIPPQHYVVKWKEGFERHEKHFDNKKKAQAFFRTVRKTATDFIRIVKWH*
Ga0115011_100005234	F000245	AGGA	VKTFLEYTSHREKLDKYVIDEIKKRKLARFPVNATDDYRMKQGKPTFKFPSPTGEMMIHVWLRPMAKPAKSHTKAFNYQLEDE*
Ga0115011_1000052353	F000942	AGGAG	MSNPYELRFKILEMAQGYLADQVARSENMMFQAWEHAKETGDANMELWKRLQPETYSIDDIKKKASELYEFVEKK*
Ga0115011_100005239	F000659	N/A	MKTFTQFLEEASKYIVSQNPHDNKWYVMGHVGRNKWMPVSNGFKNKTQAQKWAKSQDKVDSAARGEIGAV*