Scaffold Ga0130025_1093574

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0130025_1093574

Scaffold Ga0130025_1093574

Overview

Basic Information
Taxon OID	3300009566 Open in IMG/M
Scaffold ID	Ga0130025_1093574 Open in IMG/M
Source Dataset Name	Methanogenic o-xylene degrading microbial communities from aquifer solids in Pensacola, Florida - enrichment culture X8-AB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Colorado
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2626
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Aquifer Solids → Methanogenic O-Xylene Degrading Microbial Communities From Aquifer Solids In Pensacola, Florida - Enrichment Culture X8-Ab

Source Dataset Sampling Location
Location Name	Pensacola, Florida
Coordinates	Lat. (^o)	30.703611	Long. (^o)	-87.369167	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060548	Metagenome	132	Y
F071903	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0130025_10935743	F071903	AGGAGG	MNRTEQAAARHEAELQEALGHLEYFKRTALALDQAMKVMAKDLQVCRKNEQIWEKRIEQMQEKA*
Ga0130025_10935744	F060548	AGGAG	MSTVTNRPRQRKVTDFVDKQVATLIKDHAGAELCIEDLVAVAIKEMPGFEWKDDKIRHSVNRLEKRGRLASRYVVRSKRLCRIPYVI*

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