Scaffold Ga0130030_1004197

Overview

Basic Information

• Taxon OID: 3300009563
• Scaffold ID: Ga0130030_1004197
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 5, Depth 6m; RNA IDBA-UD
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2308
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066267	Metagenome / Metatranscriptome	127	N
F080647	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0130030_10041972	F066267	N/A	MVVSNITKWLVKHYPDAVLVALKPDAKNWKAGCEFMVDIDGHKYYKFRDSGDVPLVRYKEIQAVLIQLDNRLTSDELTSILAIARESVVAAIEGQSRKDRGKGLQQCLWAIQEAESRHKELGLHTDLIVELAALNLIRDDENPFEINETIQAEKLRLFKREFVNHDFFLSAGMNEFLPNAEQLADVWQQLWQASDQFQSKKKDILKSILGEIRSSIG*
Ga0130030_10041973	F080647	N/A	TTLLLTSLFIFGLWLSSAEGKILDDIRWRFISQFPELAKPVIDCPTCMASVYGTIAYWGDVIIANQPVDALTAIGWPIFVFCLAGLNGIILKLAKWS*