NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105249_11722896

Scaffold Ga0105249_11722896


Overview

Basic Information
Taxon OID3300009553 Open in IMG/M
Scaffold IDGa0105249_11722896 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)699
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003682Metagenome474Y
F014558Metagenome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0105249_117228961F014558N/ALGGEMNFVMQRVDYDPHRGRAYVEFREPDGDGGDAIATTIFSYRTRDKLTKKQVHEEIVRKARHLLRRAAAAT*
Ga0105249_117228962F003682AGGMPDLSVAVDHHDITVSKPSLGLSITYRRQGRILEAVKLMQIDPSAVELIFLVRAWKAAFAKAQSLGWLN*

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