Scaffold Ga0105249_10316299

Overview

Basic Information

• Taxon OID: 3300009553
• Scaffold ID: Ga0105249_10316299
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1571
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024347	Metagenome	206	Y
F033861	Metagenome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105249_103162991	F024347	N/A	HQYIYNFRKIVELAREAGVPLPEDLRPHDLRRTCATLALEQNPLEYRKVLRKLGHTYPSSAAPYLIATDADVEDEQGDLIDIFIDPDMEKRGTK*
Ga0105249_103162993	F033861	AGG	MQRGRSIICEECKLPRKSRRWFDVCDLCVRKLPKVQCGGCPTKVRRLQPDSPFCLQCSRRLSKVKIACEKCGLADYPRISYPGHCGKCYLNAIHRKNLKLRLRKLVCSACGLTKTSLPNAEMICKTCYEKRRRSKGTCTVTGCRGSTLHKKLQLCIYHNQDRRAPKLLSTYIKSYDSPFPQNVRYFLALTANLRLANCDVEERSVRARDLCKYRAIGEYLRSIELPEMLTWEAIHEAMPKLNKLSKRGRTRSRWIRSGLLELANHFLPEQLVPYQRERVMEKWLRSTPVMFVEDVTAFEKWA