Scaffold Ga0105249_10146496

Overview

Basic Information

• Taxon OID: 3300009553
• Scaffold ID: Ga0105249_10146496
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2269
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015113	Metagenome / Metatranscriptome	257	Y
F073749	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105249_101464961	F015113	N/A	GRNAAMSVVRVILREGQEKLYHEAQASMHTPDRTLRITRNQESIAEFQSEYYQYWEYVEETSAGTGEDTQTDTSVSG*
Ga0105249_101464962	F073749	AGGAG	MTFDDYQACLNALFAADRQLNLVQARFAASGAGGGTIDAFQLLRLAMVQCLERLEQQYARQYPDHELADVCALLEAQRAPEGQRAGELVLQDVLRRPTAEMLPHHPERHDR*