Scaffold Ga0105249_10023048

Overview

Basic Information

• Taxon OID: 3300009553
• Scaffold ID: Ga0105249_10023048
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5582
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011696	Metagenome	288	Y
F048401	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105249_100230481	F048401	N/A	FEPVEELPRLDIMSALKKSLQASSRKPMVKAPAPAAKKKPQITLVKPRAAKKRKVG*
Ga0105249_1002304811	F011696	N/A	MSKRRVMAKAKVYGFSPWVDQVDAINQIMKDSGDKNESALLRKLVDEALDARRKKSRSAPLTEESEHAGVRLETIESLLMRLVCEGNISLRVQDVCLALLQDVLAETYAAHRLLWESLVLPHLRATGIDVNELESRFALAEARAKNYAYGLAEQIKQSQETDEMR*