NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116138_1017590

Scaffold Ga0116138_1017590


Overview

Basic Information
Taxon OID3300009552 Open in IMG/M
Scaffold IDGa0116138_1017590 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2252
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076450Metagenome118N
F079694Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0116138_10175901F079694N/AALYPGDVGYSWNNEAFPGANTSGTQFALSTPGGYAPETGFTVRWQTIFGGAPSAISIKLQGAMADVDAEYQDMDASTQVAGEARQVTGVQAKFLRIKLYSSTGGSGLTAKILV*
Ga0116138_10175902F076450N/AMVLSVGVTSASLQLNPSRHYRLWGSVDMFFQFGPTGVTVTLNSHPAAAKLDYLHYTDDTNTTLAAIVSSGTGVLFISEIDAQGV*

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